PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012015-PA
Common NameOsI_10315
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 329aa    MW: 35204.6 Da    PI: 6.0615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012015-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.7e-15109160155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P +   +s++ + a+i+  A++Y+k+L+
  BGIOSGA012015-PA 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YSQRGDQASIVGGAINYVKELE 160
                       79****************************...*******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.83E-15107164No hitNo description
PROSITE profilePS5088815.967108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17109174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14109164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGGG FGEFYGVDEW DDQLQVASVD  60
EWEVASKDNS DASTEGKAAA AERAAPVAAG RRKRRRTKVV KNKEEIECQR MTHIAVERNR  120
RRQMNEYLAV LRSLMPASYS QRGDQASIVG GAINYVKELE QLLQSLEVQK SLKNRSGAMD  180
AAGDSPFAGF FSFPQYSTSP RTGCSAAASA GSSGSASSVV MDDTAGSAES GRQSAAIADI  240
EVTMVEGHAS LKVLARRRPK QLLKLVVGLQ QLRIPPLHLN VTTVDAMVLY SFSLKVEDDS  300
KLGSVEDIAT AVHQILGSIQ QQEAVLSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195RKRRR
29196RKRRRT
3109120RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.313030.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329927640.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T41e-84BH096_ARATH; Transcription factor bHLH96
TrEMBLA2XDD40.0A2XDD4_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0G2960.0A0A0E0G296_ORYNI; Uncharacterized protein
STRINGBGIOSGA012015-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-59bHLH family protein